#!/usr/bin/env python3 import argparse import logging import os import sys import time import psycopg2 import psycopg2.extensions from psycopg2.sql import SQL, Identifier sys.path.append(os.path.join(os.path.dirname(__file__), "../..")) from scripts.lib.setup_path import setup_path setup_path() from scripts.lib.zulip_tools import su_to_zulip su_to_zulip() os.environ["DJANGO_SETTINGS_MODULE"] = "zproject.settings" from django.conf import settings parser = argparse.ArgumentParser( description="Reindex all text indexes, for glibc upgrades. This will take a write lock on every table, unless --concurrently is passed." ) parser.add_argument( "--concurrently", action="store_true", help="reindex concurrently, on Pg ≥ 11; takes longer" ) parser.add_argument("--force", action="store_true", help="run the reindexing") options = parser.parse_args() logging.Formatter.converter = time.gmtime logging.basicConfig(format="%(asctime)s %(levelname)s: %(message)s") logger = logging.getLogger("reindex-textual-data") logger.setLevel(logging.DEBUG) pg_args = {} pg_args["host"] = settings.DATABASES["default"]["HOST"] pg_args["port"] = settings.DATABASES["default"].get("PORT") pg_args["password"] = settings.DATABASES["default"].get("PASSWORD") pg_args["user"] = settings.DATABASES["default"]["USER"] pg_args["dbname"] = settings.DATABASES["default"]["NAME"] pg_args["sslmode"] = settings.DATABASES["default"]["OPTIONS"].get("sslmode") pg_args["connect_timeout"] = "600" conn = psycopg2.connect(**pg_args) conn.autocommit = True pg_server_version = conn.server_version can_concurrently = pg_server_version >= 110000 # Version 11.0.0 if options.concurrently and not can_concurrently: raise RuntimeError("Only PostgreSQL 11 and above can REINDEX CONCURRENTLY.") cursor = conn.cursor() cursor.execute( """ SELECT irel.relname AS index_name, trel.relname AS table_name, pg_size_pretty(pg_table_size(i.indrelid)) AS size FROM pg_index AS i JOIN pg_class AS trel ON trel.oid = i.indrelid JOIN pg_namespace AS tnsp ON trel.relnamespace = tnsp.oid JOIN pg_class AS irel ON irel.oid = i.indexrelid CROSS JOIN unnest(i.indkey) colnum JOIN pg_attribute AS a ON trel.oid = a.attrelid AND a.attnum = colnum WHERE tnsp.nspname = 'zulip' AND a.attcollation != 0 GROUP BY 1, 2, i.indrelid ORDER BY pg_table_size(i.indrelid) ASC """ ) reindex_targets = cursor.fetchall() if not options.force: print("Would reindex the following indexes:") for index, _, _ in reindex_targets: print(f" {index}") print( """ Re-run with --force to reindex these. Without --concurrently, these index rebuilds will TAKE A WRITE LOCK on their respective tables, which means that production traffic will be affected. On PostgreSQL 11 and above, you can pass --concurrently, which will do the index rebuilds without taking such a lock. We recommend only using --concurrently if the Zulip server will be serving traffic while running this tool, because concurrent reindexing takes longer to complete even if the server is not running. """ ) sys.exit(0) had_failures = False for index_name, table_name, index_size in reindex_targets: if options.concurrently: command = SQL("REINDEX INDEX CONCURRENTLY {}").format(Identifier(index_name)) else: command = SQL("REINDEX INDEX {}").format(Identifier(index_name)) logger.info("%s -- on %s, %s", command, table_name, index_size) try: cursor.execute(command) except psycopg2.OperationalError as e: logger.warning("Failed to reindex %s: %s", index_name, e) had_failures = True if not had_failures: sys.exit(0) print( """ =========================> REINDEXING FAILED <========================= Reindexing failed on one or more indexes; this is generally caused by duplicate rows that had been incorrectly inserted because of corrupted database indexes. This happens, for example, when glibc was upgraded to 2.28 or higher, which has a different ordering of text ("collation") than earlier versions. Because of the new ordering, entries in the indexes are not found (because they exist in a different place), which results in duplicates being created in the database for columns which should be unique. There is no generalized tool to fix these duplicate rows, but in most cases the database can be repaired with some manual work. We are using this chat.zulip.org for support around such repairs: https://chat.zulip.org/#narrow/stream/31-production-help/topic/database.20corruption This tool has regenerated all database indexes that do not have duplicate rows. Once you have manually repaired duplicate rows, you can rerun this command to regenerate the rest. It is reasonable to run your Zulip server to avoid downtime while you plan the manual repair work. Additional duplicate rows may be created for any corrupted index that has not yet been regenerated. But any new duplicate rows will be similar to existing duplicate rows that you already need to manually repair. """ ) sys.exit(1)