diff --git a/tools/backup b/tools/deprecated/backup
similarity index 100%
rename from tools/backup
rename to tools/deprecated/backup
diff --git a/tools/finbot/money.py b/tools/deprecated/finbot/money.py
similarity index 100%
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rename to tools/deprecated/finbot/money.py
diff --git a/tools/finbot/monthdelta.py b/tools/deprecated/finbot/monthdelta.py
similarity index 100%
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rename to tools/deprecated/finbot/monthdelta.py
diff --git a/tools/generate-activity-metrics.py b/tools/deprecated/generate-activity-metrics.py
similarity index 100%
rename from tools/generate-activity-metrics.py
rename to tools/deprecated/generate-activity-metrics.py
diff --git a/tools/iframe-bot/last-messages-wrapper.sh b/tools/deprecated/iframe-bot/last-messages-wrapper.sh
similarity index 100%
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rename to tools/deprecated/iframe-bot/last-messages-wrapper.sh
diff --git a/tools/iframe-bot/show-last-messages b/tools/deprecated/iframe-bot/show-last-messages
similarity index 100%
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rename to tools/deprecated/iframe-bot/show-last-messages
diff --git a/tools/include-supported.example b/tools/deprecated/include-supported.example
similarity index 100%
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rename to tools/deprecated/include-supported.example
diff --git a/tools/inject-messages/inject-messages b/tools/deprecated/inject-messages/inject-messages
similarity index 100%
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diff --git a/tools/inject-messages/othello b/tools/deprecated/inject-messages/othello
similarity index 100%
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diff --git a/tools/msmtprc.example b/tools/deprecated/msmtprc.example
similarity index 100%
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diff --git a/tools/review b/tools/deprecated/review
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diff --git a/tools/stress-test/.gitignore b/tools/deprecated/stress-test/.gitignore
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diff --git a/tools/stress-test/README.md b/tools/deprecated/stress-test/README.md
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diff --git a/tools/stress-test/package.json b/tools/deprecated/stress-test/package.json
similarity index 100%
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diff --git a/tools/stress-test/stress-test.coffee b/tools/deprecated/stress-test/stress-test.coffee
similarity index 100%
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rename to tools/deprecated/stress-test/stress-test.coffee
diff --git a/tools/stress-test/support.coffee b/tools/deprecated/stress-test/support.coffee
similarity index 100%
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diff --git a/tools/migrate-puppet b/tools/migrate-puppet
deleted file mode 100644
index b8b628b8f9..0000000000
--- a/tools/migrate-puppet
+++ /dev/null
@@ -1,14 +0,0 @@
-#!/bin/bash -xe
-
-# This is a one-off script to deal with changes in our puppet
-# configuration.  You should not normally have to run this.
-
-cd /root/zulip
-git fetch
-git checkout f4eb523244d3409b5809c279301225d3fdf0c230
-scripts/zulip-puppet-apply
-
-git checkout master
-git pull --rebase
-cp puppet/zulip/files/puppet.conf /etc/puppet/
-scripts/zulip-puppet-apply
diff --git a/tools/migrate-server-config b/tools/migrate-server-config
deleted file mode 100755
index adc752d4a5..0000000000
--- a/tools/migrate-server-config
+++ /dev/null
@@ -1,25 +0,0 @@
-#!/usr/bin/python
-import os
-import ConfigParser
-import platform
-import re
-
-config = ConfigParser.RawConfigParser()
-config.add_section("machine")
-
-with open('/etc/zulip/machinetype') as f:
-    machinetype = f.readline().strip()
-
-config.set('machine', 'puppet_classes', "zulip-internal::%s" % (machinetype,))
-
-if os.path.exists('/etc/zulip/server'):
-    if platform.node() == 'staging.zulip.net':
-        deploy_type = 'staging'
-    elif not not re.match(r'^test', platform.node()):
-        deploy_type = 'test'
-    else:
-        deploy_type = 'prod'
-
-    config.set('machine', 'deploy_type', deploy_type)
-
-config.write(open('/etc/zulip/zulip.conf', 'w'))
diff --git a/tools/publish.example b/tools/publish.example
deleted file mode 100644
index 9079307376..0000000000
--- a/tools/publish.example
+++ /dev/null
@@ -1,21 +0,0 @@
-#!/bin/bash
-# publish -- rsync to a remote host
-#
-# Copyright © 2013 Zulip, Inc. All rights reserved.
-# This is an unpublished work of Zulip, Inc.
-#
-
-USER=""
-HOST="apt.zulip.net"
-PATH="/var/www/apt/user"
-
-set -e
-
-if [ "$1" == "-f" ]; then
-    rsync -avz --delete . $USER@$HOST:$PATH
-else
-    echo "SIMULATED SYNC"
-    echo
-    rsync --dry-run -avz --delete . $USER@$HOST:$PATH
-    echo "This was a dry run. Pass -f to actually perform."
-fi